Promoter Summary of J065040D24

TSS information

Type	Sequence	TPM score	Genome position		Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available		Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position		Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available		Not Available

Core promoter information

Type	Sequence	Genome position			Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available			Not Available
TATA Box	None	None			None
Y Patch	None	None			None
GA	None	None			None
Inr	None	None			None

REG information

Type		Sequence	Annotation	Genome position			Position from initiation codon
				Strand	Start	End	Start	End
REG		None	None			None

Other Reliable Promoter Summary

TSS information

Type	Sequence	TPM score	Genome position		Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available		Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position		Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available		Not Available

Core promoter information

Type	Sequence	Genome position			Gene model
		Strand	Start	End
initiator	Not Available	Not Available			Not Available
TATA Box	None	None			None
Y Patch	None	None			None
GA	None	None			None
Inr	None	None			None

REG information

Type		Sequence	Annotation	Genome position			Gene model
				Strand	Start	End
REG		CACGGCCCAGT		+	3186955	3186965	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG504	CACGGCCC		PPDB Motif	GCCCA		PLACE Motif
	OsREG445	ACGGCCCA		PPDB Motif	GCCCA		PLACE Motif	AACAAAC
	OsREG565	CGGCCCAG		PPDB Motif	GCCCA		PLACE Motif
	OsREG454	GGCCCAGT		PPDB Motif	GCCCA		PLACE Motif
REG		CATCCCCC		+	3186968	3186975	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG516	CATCCCCC		PPDB Motif			PLACE Motif
REG		CCCACTCT		+	3186998	3187005	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG455	CCCACTCT		PPDB Motif			PLACE Motif