Promoter Summary of J065040D24

TSS information

Type	Sequence	TPM score	Genome position		Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available		Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position		Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available		Not Available

Core promoter information

Type	Sequence	Genome position			Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available			Not Available
TATA Box	None	None			None
Y Patch	None	None			None
GA	None	None			None
Inr	None	None			None

REG information

Type		Sequence	Annotation	Genome position			Position from initiation codon
				Strand	Start	End	Start	End
REG		None	None			None

Other Reliable Promoter Summary

TSS information

Type	Sequence	TPM score	Genome position		Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available		Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position		Gene model
			Strand	Position
TSS clone peak	G	clone	+	3187198	AK064836, J033060H13, J033118E14, J043039J02, J043039N08, J023086E11, J023114B19, AK071081, J043030N04, J023013O19, J023044M05, J013041A17, J013088K24, AK064836, J013000F21, J013024G05, J013047F10, J023069G09, J023091I09, J033075P14, J033092E18, J033123C07, J013063J23, J023139I06, J013045F04, J013059O17, J013098G04, J013102E18, J013146H15, J023101D06, J023109B03, J023134F22, J033112I05, J090023J24, J090033H01, AK104859, J043003C01, J033101G23, J013119M18, J013149A14, J013046F04, J013059J07, J013123I19, J023048O03, J023049L17, J033084O05, J013060A20, J023091M19, J033118P04, J023003A05, J033087G04, AK100712, J013066D19, J013100I15, J023115H16, J090022G17, J090038A03, J090049E10, J090063E24, J100021G23, J100028P06, J100060L21, J100077D16, J090041O22, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J023060D22, J023060F20, J023113B14, J043024B21, J090020H22, J013045D10, J013035E12, J013102O09, J013069O08, J023150C02, J033058O11, J013051E10, J033033A14, J100088I09, J090014O14, J090080N12
TSS clone peak	C	clone	+	3187235	AK064836, J033060H13, J033118E14, J043039J02, J043039N08, J023086E11, J023114B19, AK071081, J043030N04, J023013O19, J023044M05, J013041A17, J013088K24, AK064836, J013000F21, J013024G05, J013047F10, J023069G09, J023091I09, J033075P14, J033092E18, J033123C07, J013063J23, J023139I06, J013045F04, J013059O17, J013098G04, J013102E18, J013146H15, J023101D06, J023109B03, J023134F22, J033112I05, J090023J24, J090033H01, AK104859, J043003C01, J033101G23, J013119M18, J013149A14, J013046F04, J013059J07, J013123I19, J023048O03, J023049L17, J033084O05, J013060A20, J023091M19, J033118P04, J023003A05, J033087G04, AK100712, J013066D19, J013100I15, J023115H16, J090022G17, J090038A03, J090049E10, J090063E24, J100021G23, J100028P06, J100060L21, J100077D16, J090041O22, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J023060D22, J023060F20, J023113B14, J043024B21, J090020H22, J013045D10, J013035E12, J013102O09, J013069O08, J023150C02, J033058O11, J013051E10, J033033A14, J100088I09, J090014O14, J090080N12

Core promoter information

Type	Sequence	Genome position			Gene model
		Strand	Start	End
initiator	Not Available	Not Available			Not Available
TATA Box	None	None			None
Y Patch	CTCTCTCT	+	3187156	3187163	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
GA	None	None			None
Inr	None	None			None

REG information

Type		Sequence	Annotation	Genome position			Gene model
				Strand	Start	End
REG		CACGGCCCAGT		+	3186955	3186965	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG504	CACGGCCC		PPDB Motif	GCCCA		PLACE Motif
	OsREG445	ACGGCCCA		PPDB Motif	GCCCA		PLACE Motif	AACAAAC
	OsREG565	CGGCCCAG		PPDB Motif	GCCCA		PLACE Motif
	OsREG454	GGCCCAGT		PPDB Motif	GCCCA		PLACE Motif
REG		CATCCCCC		+	3186968	3186975	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG516	CATCCCCC		PPDB Motif			PLACE Motif
REG		CCCACTCT		+	3186998	3187005	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG455	CCCACTCT		PPDB Motif			PLACE Motif
REG		CACACACC		+	3187028	3187035	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG499	CACACACC		PPDB Motif			PLACE Motif
REG		CCCACCACGCGTCC		+	3187043	3187056	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG527	CCCACCAC		PPDB Motif	GCCCA		PLACE Motif
	OsREG443	CCACGCGT		PPDB Motif			PLACE Motif
	OsREG442	ACGCGTCC		PPDB Motif			PLACE Motif
REG		GCCCAGATCCAACGGCT		+	3187086	3187102	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG486	GCCCAGAT		PPDB Motif	GCCCA		PLACE Motif
	OsREG481	ATCCAACG		PPDB Motif	CCAACGG		PLACE Motif
	OsREG548	TCCAACGG		PPDB Motif	CCAACGG		PLACE Motif
	OsREG518	CCAACGGC		PPDB Motif	CCAACGG		PLACE Motif
	OsREG469	CAACGGCT		PPDB Motif	CCAACGG		PLACE Motif
REG		CATCCCCCA		+	3187110	3187118	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG516	CATCCCCC		PPDB Motif			PLACE Motif
	OsREG482	ATCCCCCA		PPDB Motif			PLACE Motif
REG		GTGACGTGGACCGGACGCGTCC		+	3187132	3187153	AK064836, AK071081, AK100712, AK104859, J013000F21, J013024G05, J013035E12, J013041A17, J013045D10, J013045F04, J013046F04, J013047F10, J013051E10, J013059J07, J013059O17, J013060A20, J013063J23, J013066D19, J013069O08, J013088K24, J013098G04, J013100I15, J013102E18, J013102O09, J013119M18, J013123I19, J013146H15, J013149A14, J023003A05, J023013O19, J023044M05, J023048O03, J023049L17, J023060D22, J023060F20, J023069G09, J023086E11, J023091I09, J023091M19, J023101D06, J023109B03, J023113B14, J023114B19, J023115H16, J023134F22, J023139I06, J023150C02, J033033A14, J033058O11, J033060H13, J033075P14, J033084O05, J033087G04, J033092E18, J033101G23, J033112I05, J033118E14, J033118P04, J033123C07, J043003C01, J043024B21, J043030N04, J043039J02, J043039N08, J075006N21, J075008A16, J075018J16, J075023G04, J075134F18, J075181B05, J090014O14, J090020H22, J090022G17, J090023J24, J090033H01, J090038A03, J090041O22, J090049E10, J090063E24, J090080N12, J100021G23, J100028P06, J100060L21, J100077D16, J100088I09
	OsREG505	GTGACGTG		PPDB Motif	ACGT		PLACE Motif	TGAC
	OsREG570	CGTGGACC		PPDB Motif			PLACE Motif
	OsREG442	GGACGCGTCC		PPDB Motif			PLACE Motif