Summary of Gene (J065044C17)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J065044C17 5'->3' (+) Promoter sequence 003-004-F03
009-069-F08 AK059694 J013067H17 J013154H24 J023128E17 J033120A21 J053050F13 J053077G20 J053090B15 J053098J24 J065100G18 J065127K04 J065157N17 J075137F15 J075195F14 J080014C14 J080014E08 J090029A19 J100059N24 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 26341119 | -121 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTTCTCTCTCTCCTCTT | + | 26341083 | 26341103 | -157 | -137 |
Y Patch | CCTCCCTCTC | + | 26341127 | 26341136 | -113 | -104 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTCGCGTC | + | 26340884 | 26340891 | -356 | -349 | |||
OsREG583 | GTCGCGTC | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGCCGTTGGCCCGTGGG | + | 26340938 | 26340954 | -302 | -286 | |||
OsREG469 | AGCCGTTG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
OsREG518 | GCCGTTGG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
OsREG531 | CCCGTGGG | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
REG | TCATGGGCTGA | + | 26341001 | 26341011 | -239 | -229 | |||
OsREG609 | TCATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG467 | CATGGGCT | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG491 | ATGGGCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG657 | TGGGCTGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGATGGGCCAGA | + | 26341021 | 26341032 | -219 | -208 | |||
OsREG456 | AGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | TGGGCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG638 | GGGCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCCGGCCCAAG | + | 26341035 | 26341045 | -205 | -195 | |||
OsREG644 | TCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG581 | GGCCCAAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCACCAC | + | 26341047 | 26341054 | -193 | -186 | |||
OsREG527 | CCCACCAC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 26340935 | AK059694, J013067H17, AK059694, 003-004-F03, J075195F14, J053077G20 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCCCC | - | 26340952 | 26340959 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | |
Y Patch | TCTTCCTCCTC | - | 26340966 | 26340976 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCAGCCCATGA | - | 26341001 | 26341011 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | ||||
OsREG657 | TCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | CAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG467 | AGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG609 | GCCCATGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCTGGCCCATCT | - | 26341021 | 26341032 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | ||||
OsREG638 | TCTGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | CTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG456 | GCCCATCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CTTGGGCCGGA | - | 26341035 | 26341045 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | ||||
OsREG581 | CTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG644 | GGGCCGGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTGGTGGG | - | 26341047 | 26341054 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | ||||
OsREG527 | GTGGTGGG | PPDB Motif | GCCCA  | PLACE Motif |   |