Summary of Gene (J065044C17)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 006-033-E09 006-038-C03 006-046-C06 006-117-F10 006-118-E01 013-056-G08 AK059769 AK068583 AK072855 AK106210 J023039K10 J023061P22 J023138P05 J023143J07 J023146B18 J033022O09 J033092H12 J033111L02 J033135O03 J033148P09 J043006H17 J065005K19 J065116K09 J065119O21 J065138I21 J065169E06 J065200O05 J075014L05 J075109H16 J075117D04 J100056F17 J100057E24 J100085M03 TSS from cDNA TSS information J065044C17 5'->3' (+) Promoter sequence 003-004-F03
009-069-F08 AK059694 J013067H17 J013154H24 J023128E17 J033120A21 J053050F13 J053077G20 J053090B15 J053098J24 J065100G18 J065127K04 J065157N17 J075137F15 J075195F14 J080014C14 J080014E08 J090029A19 J100059N24 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 26341119 | -121 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTTCTCTCTCTCCTCTT | + | 26341083 | 26341103 | -157 | -137 |
Y Patch | CCTCCCTCTC | + | 26341127 | 26341136 | -113 | -104 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTCGCGTC | + | 26340884 | 26340891 | -356 | -349 | |||
OsREG583 | GTCGCGTC | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGCCGTTGGCCCGTGGG | + | 26340938 | 26340954 | -302 | -286 | |||
OsREG469 | AGCCGTTG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
OsREG518 | GCCGTTGG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
OsREG531 | CCCGTGGG | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
REG | TCATGGGCTGA | + | 26341001 | 26341011 | -239 | -229 | |||
OsREG609 | TCATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG467 | CATGGGCT | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG491 | ATGGGCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG657 | TGGGCTGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGATGGGCCAGA | + | 26341021 | 26341032 | -219 | -208 | |||
OsREG456 | AGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | TGGGCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG638 | GGGCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCCGGCCCAAG | + | 26341035 | 26341045 | -205 | -195 | |||
OsREG644 | TCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG581 | GGCCCAAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCACCAC | + | 26341047 | 26341054 | -193 | -186 | |||
OsREG527 | CCCACCAC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 26340935 | AK059694, J013067H17, AK059694, 003-004-F03, J075195F14, J053077G20 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCCCC | - | 26340952 | 26340959 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | |
Y Patch | TCTTCCTCCTC | - | 26340966 | 26340976 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCAGCCCATGA | - | 26341001 | 26341011 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | ||||
OsREG657 | TCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | CAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG467 | AGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG609 | GCCCATGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCTGGCCCATCT | - | 26341021 | 26341032 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | ||||
OsREG638 | TCTGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | CTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG456 | GCCCATCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CTTGGGCCGGA | - | 26341035 | 26341045 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | ||||
OsREG581 | CTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG644 | GGGCCGGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTGGTGGG | - | 26341047 | 26341054 | 003-004-F03, AK059694, J013067H17, J053077G20, J075195F14 | ||||
OsREG527 | GTGGTGGG | PPDB Motif | GCCCA  | PLACE Motif |   |