Summary of Gene (J065047C13)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK104827 J013000L12 J013156N02 J065001H14 J065038D18 J065039I18 J065053J09 J065064G03 J065066M05 J065068O10 J065090H22 J065113L19 J065121M02 J065122K23 J065138C12 J065153E14 J065156N12 J065158L20 J065166I06 J065174L15 J065175N03 J090092C23 TSS from cDNA TSS information J065047C13 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 32089094 | -283 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGTCCGAT | + | 32088804 | 32088811 | -573 | -566 | |||
OsREG484 | CGTCCGAT | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGGACGGA | + | 32088860 | 32088867 | -517 | -510 | |||
OsREG561 | CGGACGGA | PPDB Motif |   | PLACE Motif |   | ||||
REG | AACGGGCC | + | 32088875 | 32088882 | -502 | -495 | |||
OsREG424 | AACGGGCC | PPDB Motif | AAACG(C/G), ACGGGC, CCAACGG  | PLACE Motif |   | ||||
REG | AGCCCACGGG | + | 32088886 | 32088895 | -491 | -482 | |||
OsREG463 | AGCCCACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG547 | GCCCACGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG531 | CCCACGGG | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
REG | TCCGGCCCAAAC | + | 32088910 | 32088921 | -467 | -456 | |||
OsREG644 | TCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG593 | GCCCAAAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCAAGCCCAAAA | + | 32088968 | 32088979 | -409 | -398 | |||
OsREG519 | CCAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG496 | CAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG426 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG457 | AGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG592 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |