PlantPromoterDB promoter information of J065069D09
Summary of Gene (J065069D09)
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Overview
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Focused view (chromosome 1: 36289252-36290451)
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Genome position
from initiation codon AK072651 AK104334 J013030E13 J013169M21 J023012J16 J023103F22 J023123A01 J023131F07 J023146I01 J033040K02 J033079F06 J033105G06 J033117E08 J043030C01 J053043H16 J053061H01 J065044A03 J065068E12 J065143M19 J065193C10 J065209D07 J090042B19 J090043G06 J090083C17 J090086G06 J090093I09 J100023G21 J100025D15 J100034B13 J100040F10 J100051E15 J100056L08 J100057H04 J100085K20 J100088G21 TSS from cDNA TSS information J065069D09 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J065069D09
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 36287621 | -681 |
| TSS clone peak | G | clone | + | 36287623 | -679 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCAAAACGCACGCG | + | 36287459 | 36287474 | -843 | -828 | |||
| OsREG592 | GCCCAAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG555 | CGCACGCG | PPDB Motif | PLACE Motif | ||||||
| REG | GGTGGGGCCCACCT | + | 36287500 | 36287513 | -802 | -789 | |||
| OsREG612 | GGTGGGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG631 | GTGGGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG641 | TGGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | GGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG628 | GGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG476 | GCCCACCT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||