PlantPromoterDB promoter information of J065075C09
Summary of Gene (J065075C09)
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Overview
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Focused view (chromosome 5: 13522418-13521219)
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Genome position
from initiation codon 006-021-F06 006-092-B10 006-097-A07 006-103-F05 006-117-B11 016-010-A05 AK070578 J013056H13 J013071O15 J013091J17 J013123L19 J023012P18 J023023M10 J023028M19 J023049J21 J023055K06 J023061F14 J023066H16 J023066J16 J023082F16 J023148A07 J033046H23 J033046L14 J033124E20 J033148D22 J043021L21 J053025A21 J053032M02 J053043C24 J053057K17 J053070B11 J053077A02 J065034K12 J065076P14 J065127C06 J065160K05 J065191F21 J065211M03 J090004E08 J090053A12 J090066E17 J090097H02 J100038B03 J100048P14 J100051P09 J100061L15 J100062G09 J100073C08 J100074F03 TSS from cDNA TSS information J065075C09 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J065075C09
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 13522394 | -976 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCGTGGA | - | 13522514 | 13522521 | -1096 | -1103 | |||
| OsREG636 | GGCGTGGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||