PlantPromoterDB promoter information of J065077M14
Summary of Gene (J065077M14)
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Overview
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Focused view (chromosome 5: 978398-977199)
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Genome position
from initiation codon J065108P21 J065138G20 J065148H07 J065205P09 J075061H16 J075153H02 TSS from cDNA TSS information J065077M14 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J065077M14
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 977212 | -64 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTCCTCT | - | 977200 | 977208 | -52 | -60 |
| Y Patch | TCCTCCTCCTCCT | - | 977242 | 977254 | -94 | -106 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCACACGCGTCC | - | 977252 | 977264 | -104 | -116 | |||
| OsREG526 | CCCACACG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG442 | ACGCGTCC | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCACAA | - | 977273 | 977280 | -125 | -132 | |||
| OsREG597 | GCCCACAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGCGTCGCG | - | 977331 | 977339 | -183 | -191 | |||
| OsREG559 | CGCGTCGC | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG556 | GCGTCGCG | PPDB Motif | PLACE Motif | CGACG | |||||
| REG | CACGTCAC | - | 977450 | 977457 | -302 | -309 | |||
| OsREG505 | CACGTCAC | PPDB Motif | ACGT | PLACE Motif | TGAC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||