Summary of Gene (J065077M14)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J065108P21 J065138G20 J065148H07 J065205P09 J075061H16 J075153H02 TSS from cDNA TSS information J065077M14 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 977212 | -64 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCCTCT | - | 977200 | 977208 | -52 | -60 |
Y Patch | TCCTCCTCCTCCT | - | 977242 | 977254 | -94 | -106 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCACACGCGTCC | - | 977252 | 977264 | -104 | -116 | |||
OsREG526 | CCCACACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG442 | ACGCGTCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCCCACAA | - | 977273 | 977280 | -125 | -132 | |||
OsREG597 | GCCCACAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGCGTCGCG | - | 977331 | 977339 | -183 | -191 | |||
OsREG559 | CGCGTCGC | PPDB Motif |   | PLACE Motif | CGACG  | ||||
OsREG556 | GCGTCGCG | PPDB Motif |   | PLACE Motif | CGACG  | ||||
REG | CACGTCAC | - | 977450 | 977457 | -302 | -309 | |||
OsREG505 | CACGTCAC | PPDB Motif | ACGT  | PLACE Motif | TGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |