PlantPromoterDB promoter information of J065079P07
Summary of Gene (J065079P07)
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Overview
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Focused view (chromosome 6: 31766745-31767944)
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Genome position
from initiation codon 006-056-A08 006-073-E01 006-117-C07 011-085-B05 AK061042 AK099339 AK104020 AK105798 J033028I21 J053091K20 J065085J16 J065135C05 J065167C04 J065183C21 J065183J09 J100034O08 J100047I08 X56063 Z29961 TSS from cDNA TSS information J065079P07 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J065079P07
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 31767836 | -59 |
| TSS clone peak | A | clone | + | 31767839 | -56 |
| TSS clone | A | clone | + | 31767859 | -36 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATATAAAG | + | 31767802 | 31767810 | -93 | -85 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACACACC | + | 31767778 | 31767785 | -117 | -110 | |||
| OsREG499 | CACACACC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||