PlantPromoterDB promoter information of J065091A13
Summary of Gene (J065091A13)
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Overview
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Focused view (chromosome 3: 1641455-1642654)
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Genome position
from initiation codon AK067755 J013118G18 J065024E09 J065024I09 J065038L15 J065040E10 J065042C14 J065053F19 J065061D05 J065063H01 J065064D11 J065085I03 J065091O11 J065099G22 J065100E18 J065107B13 J065120A19 J065158E01 J065165D07 J065166K03 J065166P18 J065171K03 J065184H11 J065187H22 J065196N06 J065196P13 J065196P19 J065202P20 J065205L15 J075015H23 J075028J24 J075039I11 J075043L15 J075045C15 J075052F12 J075053J17 J075060L14 J075073G04 J075084H08 J075085O17 J075092E21 J075095M06 J075097H17 J075101I16 J075104B08 J075111K02 J075114M07 J075119G16 J075119M06 J075120B16 J075134K15 J075136M07 J075138L21 J075139H24 J075157C11 J075159H15 J075159N11 J075177F01 J075198H03 J090071B14 TSS from cDNA TSS information J065091A13 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J065091A13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 1640651 | -54 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ATATACGCG | + | 1640621 | 1640629 | -84 | -76 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCCACGCCAC | + | 1640570 | 1640579 | -135 | -126 | |||
| OsREG636 | TCCACGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG502 | CACGCCAC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||