PlantPromoterDB promoter information of J065092H13

Summary of Gene (J065092H13)

Organism	Oryza sativa
Chromosome	7
Locus	Os07g0603200 NCBI
Gene model	J065092H13
Description	NONE

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Overview

Focused view (chromosome 7: 25319816-25321015)

`Genome position from initiation codon` 012-003-E12 AK112078 J033105B08 J033111H09 J065136P15 J065171E23 J065205G15 J090017H20 J090023O14 J090093O20 TSS from cDNA TSS information J065092H13 5'->3' (+) Promoter sequence AK101352 J023077E09 J023081N15 J033022N22 J033024M18 J033034P09 J033046A06 J033051K01 J033081P09 J033091B17 J033092K23 J033132J09 J033144A14 J033145A14 J053024D23 J065212J10 J090055M05 J090065E14 J090092J06 TSS from cDNA TSS information 3'->5' (-) Promoter sequence	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of J065092H13

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak C clone - 25320003 AK101352, J053024D23, J033034P09, J033046A06, J023077E09, AK101352, J090055M05, J033081P09, J043021B20, J033051K01, J065212J10, J033092K23, J090065E14, J090092J06, J033132J09, J023081N15, J033024M18, J033145A14, J033144A14, J033091B17, J033022N22

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`C`	clone	-	25320003	AK101352, J053024D23, J033034P09, J033046A06, J023077E09, AK101352, J090055M05, J033081P09, J043021B20, J033051K01, J065212J10, J033092K23, J090065E14, J090092J06, J033132J09, J023081N15, J033024M18, J033145A14, J033144A14, J033091B17, J033022N22

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TCGCTATAAACC - 25320027 25320038 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

Y Patch TCCTTCCTC - 25319971 25319979 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

Y Patch CCTCCTCTCTCC - 25319993 25320004 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

Y Patch CCCCTCTCTCTTTCTCTCTC - 25320009 25320028 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

Y Patch CCTTCCTC - 25320037 25320044 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TCGCTATAAACC`	-	25320027	25320038	AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06
Y Patch	`TCCTTCCTC`	-	25319971	25319979	AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06
Y Patch	`CCTCCTCTCTCC`	-	25319993	25320004	AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06
Y Patch	`CCCCTCTCTCTTTCTCTCTC`	-	25320009	25320028	AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06
Y Patch	`CCTTCCTC`	-	25320037	25320044	AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CGCGTGGGGCCCACCA - 25320057 25320072 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

OsREG530 CGCGTGGG         PPDB Motif GCCCA PLACE Motif

OsREG572   CGTGGGGC       PPDB Motif PLACE Motif

OsREG631    GTGGGGCC      PPDB Motif PLACE Motif

OsREG641     TGGGGCCC     PPDB Motif GCCCA PLACE Motif

OsREG647      GGGGCCCA    PPDB Motif GCCCA PLACE Motif

OsREG640       GGGCCCAC   PPDB Motif GCCCA PLACE Motif

OsREG628        GGCCCACC PPDB Motif GCCCA PLACE Motif

OsREG599         GCCCACCA PPDB Motif GCCCA PLACE Motif

REG AGTGACAC - 25320081 25320088 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

OsREG477 AGTGACAC PPDB Motif PLACE Motif TGAC

REG GGGGCCCACA - 25320093 25320102 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

OsREG647 GGGGCCCA   PPDB Motif GCCCA PLACE Motif

OsREG640 GGGCCCAC PPDB Motif GCCCA PLACE Motif

OsREG627   GGCCCACA PPDB Motif GCCCA PLACE Motif

REG GCGGCCCATGG - 25320142 25320152 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

OsREG618 GCGGCCCA    PPDB Motif GCCCA PLACE Motif

OsREG490 CGGCCCAT   PPDB Motif GCCCA PLACE Motif

OsREG517   GGCCCATG PPDB Motif GCCCA, CCATGG PLACE Motif

OsREG525    GCCCATGG PPDB Motif GCCCA, CCATGG PLACE Motif

REG TCATGGGCCTGG - 25320155 25320166 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

OsREG609 TCATGGGC     PPDB Motif GCCCA PLACE Motif

OsREG517 CATGGGCC    PPDB Motif GCCCA, CCATGG PLACE Motif

OsREG474   ATGGGCCT   PPDB Motif GCCCA PLACE Motif

OsREG513    TGGGCCTG PPDB Motif GCCCA PLACE Motif

OsREG524     GGGCCTGG PPDB Motif GCCCA PLACE Motif

REG GCGGGCCCACACAGCCCACCAC - 25320183 25320204 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

OsREG619 GCGGGCCC               PPDB Motif GCCCA PLACE Motif

OsREG566 CGGGCCCA              PPDB Motif GCCCA, ACGGGC PLACE Motif

OsREG640   GGGCCCAC             PPDB Motif GCCCA PLACE Motif

OsREG627    GGCCCACA            PPDB Motif GCCCA PLACE Motif

OsREG598     GCCCACAC           PPDB Motif GCCCA PLACE Motif

OsREG435           ACAGCCCA     PPDB Motif GCCCA PLACE Motif

OsREG462             AGCCCACC   PPDB Motif GCCCA PLACE Motif

OsREG599              GCCCACCA PPDB Motif GCCCA PLACE Motif

OsREG527               CCCACCAC PPDB Motif GCCCA PLACE Motif

REG TCATGGGCCGGA - 25320219 25320230 AK101352, J023077E09, J023081N15, J033022N22, J033024M18, J033034P09, J033046A06, J033051K01, J033081P09, J033091B17, J033092K23, J033132J09, J033144A14, J033145A14, J043021B20, J053024D23, J065212J10, J090055M05, J090065E14, J090092J06

OsREG609 TCATGGGC     PPDB Motif GCCCA PLACE Motif

OsREG517 CATGGGCC    PPDB Motif GCCCA, CCATGG PLACE Motif

OsREG490   ATGGGCCG   PPDB Motif GCCCA PLACE Motif

OsREG542    TGGGCCGG PPDB Motif GCCCA PLACE Motif

OsREG644     GGGCCGGA PPDB Motif GCCCA PLACE Motif