PlantPromoterDB promoter information of J065112K06
Summary of Gene (J065112K06)
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Overview
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Focused view (chromosome 4: 29983871-29982672)
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Genome position
from initiation codon AK106073 J053089I23 J065128D09 J100038D09 TSS from cDNA TSS information J065112K06 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J065112K06
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 29984173 | -52 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCTGGCCCAAAA | - | 29984289 | 29984300 | -168 | -179 | |||
| OsREG638 | TCTGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG577 | CTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG659 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG592 | GCCCAAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGCTGGGC | - | 29984361 | 29984368 | -240 | -247 | |||
| OsREG603 | GGCTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GAGGCCCATT | - | 29984385 | 29984394 | -264 | -273 | |||
| OsREG587 | GAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG474 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG431 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||