Summary of Gene (J065122L11)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK121037 J065037H13 J065045D16 J065058G09 J065060C24 J065061N20 J065063J12 J065065C21 J065065G12 J065081D03 J065127I19 J065137H23 J065165H20 J065165M20 J065193P19 J075083N10 J075152I19 J075152L21 J075191K13 TSS from cDNA TSS information J065122L11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 34619713 | -513 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCGTATAAATA | + | 34619679 | 34619689 | -547 | -537 |
Y Patch | CCCTTCTCC | + | 34619690 | 34619698 | -536 | -528 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CAGGCCCAAT | + | 34619467 | 34619476 | -759 | -750 | |||
OsREG513 | CAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATGGGCTTA | + | 34619518 | 34619527 | -708 | -699 | |||
OsREG432 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG429 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG655 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATGGCCCATG | + | 34619561 | 34619570 | -665 | -656 | |||
OsREG487 | ATGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
REG | TGATGGGCCTGA | + | 34619575 | 34619586 | -651 | -640 | |||
OsREG607 | TGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG474 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG513 | TGGGCCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG646 | GGGCCTGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TATTGGGCCGAAGAGGCCCAGCCCACTTG | + | 34619606 | 34619634 | -620 | -592 | |||
OsREG596 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG642 | GGGCCGAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | AGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG620 | GGCCCAGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG603 | GCCCAGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG533 | CCCAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG523 | CCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG498 | CCCACTTG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |