PlantPromoterDB promoter information of J065137D20
Summary of Gene (J065137D20)
|
Overview
|
Focused view (chromosome 2: 6834489-6833290)
|
Genome position
from initiation codon 012-090-B01 AK064029 AK122077 AK122138 J033136E09 J065090H03 J065166E24 J065180H18 J065186E11 Os02g0222000 TSS from cDNA TSS information J065137D20 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
|
|
Promoter Summary of J065137D20
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | - | 6834314 | AK122138, AK122077, AK122138, AK064029 |
| TSS clone peak | A | clone | - | 6833635 | AK122077, AK064029 |
| TSS clone peak | A | clone | - | 6833607 | AK122077, AK064029 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GGTGTGTG | - | 6834455 | 6834462 | AK064029, AK122077, AK122138 | ||||
| OsREG499 | GGTGTGTG | PPDB Motif | PLACE Motif | ||||||