PlantPromoterDB promoter information of J065146F06
Summary of Gene (J065146F06)
|
Overview
|
Focused view (chromosome 3: 8853847-8855046)
|
Genome position
from initiation codon TSS from cDNA TSS information J065146F06 5'->3' (+) Promoter sequence AK058348
J075087I01 J090027J05 J090056C16 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
|
|
Promoter Summary of J065146F06
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 8856230 | -217 |
| TSS clone peak | A | clone | + | 8856343 | -104 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCCCTCCT | + | 8856323 | 8856330 | -124 | -117 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCAGCCC | + | 8855931 | 8855939 | -516 | -508 | |||
| OsREG603 | GCCCAGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG533 | CCCAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGTGGGCCCCA | + | 8856070 | 8856080 | -377 | -367 | |||
| OsREG627 | TGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GTGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | TGGGCCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATGGCCCACA | + | 8856088 | 8856097 | -359 | -350 | |||
| OsREG487 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG654 | TGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG627 | GGCCCACA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||