Summary of Gene (J065149M14)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J013158L10 J065015O19 J065083J02 J065144C03 J075079D02 J075083L07 J075083O13 J075108M11 J090057A07 J100037H16 J100054P20 J100057M14 J100075P13 TSS from cDNA TSS information J065149M14 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 21399147 | AK068646, J100037H16, J100075P13, J075079D02, J065083J02, J013158L10, AK068646 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACCGGCCCATCCACCCACTTG | - | 21399194 | 21399214 | AK068646, J013158L10, J065083J02, J075079D02, J100037H16, J100075P13 | ||||
OsREG440 | ACCGGCCC | PPDB Motif | GCCCA, AACCG(G/A)  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG608 | GCCCATCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG534 | CCCATCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG515 | CATCCACC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG498 | CCCACTTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCGGCCCGGCCCGGCCCAGA | - | 21399219 | 21399238 | AK068646, J013158L10, J065083J02, J075079D02, J100037H16, J100075P13 | ||||
OsREG568 | TCGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG544 | CGGCCCGGCCCGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG616 | GGCCCGGCCCGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG614 | GCCCGGCCCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG538 | CCCGGCCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG629 | GGCCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGCTGGGCCGCGTGGGCCAA | - | 21399243 | 21399263 | AK068646, J013158L10, J065083J02, J075079D02, J100037H16, J100075P13 | ||||
OsREG533 | GGGCTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG603 | GGCTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG620 | GCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | TGGGCCGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG530 | CGCGTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG602 | GCGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG654 | GTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGCCGTTG | - | 21399279 | 21399286 | AK068646, J013158L10, J065083J02, J075079D02, J100037H16, J100075P13 | ||||
OsREG469 | AGCCGTTG | PPDB Motif | CCAACGG  | PLACE Motif |   |