PlantPromoterDB promoter information of J065159H07
Summary of Gene (J065159H07)
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Overview
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Focused view (chromosome 2: 31167055-31165856)
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Genome position
from initiation codon AK121427 J023136B21 J033044C13 J043037O12 J053072C14 J065008B15 J065033I12 J065077I18 J065149G03 J065162I17 J065168H02 J065176N09 J065178K23 J065216N03 J080001G08 J080002C09 J080007N17 J080009B04 J080009B17 J080011O15 J080022B06 J080022C13 J080024L04 J080031G21 J080035N14 J080036O14 J080040P10 J080042D03 J080042H05 J080042I20 J080043A01 J080043F17 J080046I19 J080053L20 J080055A20 J080055F01 J080056L02 J080058H02 J080059F11 J080062C03 J080064A07 J080064K15 J080067M17 J080067N17 J080068G07 J080069H15 J080069L08 J080069L20 J080069L21 J080069N20 J080071N24 J080074K17 J080076H08 J080082F19 J080086O16 J090025A19 J090025M06 J090070D02 TSS from cDNA TSS information J065159H07 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J065159H07
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 31166124 | -769 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCTCTCTCTCTCTTTC | - | 31166135 | 31166151 | -780 | -796 |
| Y Patch | CCCTTCCTC | - | 31166165 | 31166173 | -810 | -818 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACGGCCCAATT | - | 31166190 | 31166201 | -835 | -846 | |||
| OsREG504 | CACGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | ACGGCCCA | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG563 | CGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG433 | GCCCAATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGCCACGT | - | 31166378 | 31166385 | -1023 | -1030 | |||
| OsREG448 | CGCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||