Summary of Gene (J065159H07)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J065159H07 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 31166124 | -769 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCTCTCTCTCTCTTTC | - | 31166135 | 31166151 | -780 | -796 |
Y Patch | CCCTTCCTC | - | 31166165 | 31166173 | -810 | -818 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CACGGCCCAATT | - | 31166190 | 31166201 | -835 | -846 | |||
OsREG504 | CACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG433 | GCCCAATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGCCACGT | - | 31166378 | 31166385 | -1023 | -1030 | |||
OsREG448 | CGCCACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |