PlantPromoterDB promoter information of J065159H07
Summary of Gene (J065159H07)
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Overview
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Focused view (chromosome 2: 31167705-31166506)
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Genome position
from initiation codon TSS from cDNA TSS information J065159H07 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J065159H07
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 31166124 | -769 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCTCTCTCTCTCTTTC | - | 31166135 | 31166151 | -780 | -796 |
| Y Patch | CCCTTCCTC | - | 31166165 | 31166173 | -810 | -818 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACGGCCCAATT | - | 31166190 | 31166201 | -835 | -846 | |||
| OsREG504 | CACGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | ACGGCCCA | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG563 | CGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG433 | GCCCAATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGCCACGT | - | 31166378 | 31166385 | -1023 | -1030 | |||
| OsREG448 | CGCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||