Summary of Gene (J065171M17)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J100063P14 TSS from cDNA TSS information J065171M17 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 42248710 | -49 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCCTCTCC | + | 42248661 | 42248669 | -98 | -90 |
Y Patch | TCTCTTTC | + | 42248714 | 42248721 | -45 | -38 |
Y Patch | TTCTCCTC | + | 42248724 | 42248731 | -35 | -28 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTATGGGCCGGCCC | + | 42248436 | 42248449 | -323 | -310 | |||
OsREG606 | GTATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG615 | GGGCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GAAGCCCACAA | + | 42248468 | 42248478 | -291 | -281 | |||
OsREG582 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG427 | AAGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG461 | AGCCCACA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG597 | GCCCACAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGGGCCCACAA | + | 42248482 | 42248492 | -277 | -267 | |||
OsREG566 | CGGGCCCA | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG627 | GGCCCACA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG597 | GCCCACAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCACGTGCTGGGCCGGC | + | 42248525 | 42248542 | -234 | -217 | |||
OsREG508 | CCCACGTG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG620 | GCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG615 | GGGCCGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCTGGGCCAA | + | 42248568 | 42248577 | -191 | -182 | |||
OsREG620 | GCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG578 | CTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGTGGGCCGGA | + | 42248581 | 42248592 | -178 | -167 | |||
OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG564 | GTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG644 | GGGCCGGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGATGGGCCGTA | + | 42248611 | 42248622 | -148 | -137 | |||
OsREG607 | TGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG645 | GGGCCGTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGCCCACGT | + | 42248651 | 42248659 | -108 | -100 | |||
OsREG463 | AGCCCACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG449 | GCCCACGT | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |