PlantPromoterDB promoter information of J065189D21
Summary of Gene (J065189D21)
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Overview
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Focused view (chromosome 2: 35817817-35819016)
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Genome position
from initiation codon J013089P19 J043022H19 J065008L14 J065016G09 J065023C22 J065024K13 J065043D14 J065052K16 J065058D17 J065087L03 J065107H15 J065110E12 J065118D06 J065124P14 J065131B20 J065155I10 J065172J02 J065180C24 J065184D04 J065201O14 J065203D20 J065206M13 J065211E14 J065217J21 J075114M16 J090004A20 TSS from cDNA TSS information J065189D21 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J065189D21
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 35817184 | -83 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCCTTCTC | + | 35817136 | 35817143 | -131 | -124 |
| Y Patch | TCTCCCCCTCCC | + | 35817153 | 35817164 | -114 | -103 |
| Y Patch | TCCTCTCCTCTC | + | 35817167 | 35817178 | -100 | -89 |
| Y Patch | CCCTTCTC | + | 35817200 | 35817207 | -67 | -60 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCGGCCCAATT | + | 35817092 | 35817103 | -175 | -164 | |||
| OsREG538 | CCCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG542 | CCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | CGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | GGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG433 | GCCCAATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCCACCT | + | 35817122 | 35817129 | -145 | -138 | |||
| OsREG476 | GCCCACCT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||