Summary of Gene (J065196J20)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J065196J20 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 22189452 | -75 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCCTCCTCC | - | 22189474 | 22189485 | -97 | -108 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGATCCGATCCG | - | 22189528 | 22189540 | -151 | -163 | |||
OsREG541 | CCGATCCGATCCG | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGTGGGCCTT | - | 22189551 | 22189560 | -174 | -183 | |||
OsREG478 | AGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG430 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TAGGCCCATT | - | 22189574 | 22189583 | -197 | -206 | |||
OsREG656 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG474 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATATGGGCCAGA | - | 22189610 | 22189621 | -233 | -244 | |||
OsREG480 | ATATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | TGGGCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG638 | GGGCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGATGGGCCCAAAT | - | 22189630 | 22189643 | -253 | -266 | |||
OsREG456 | AGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG489 | ATGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG639 | GGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG493 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |