Summary of Gene (J065197A18)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J065197A18 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 7705838 | -76 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTCT | + | 7705834 | 7705841 | -80 | -73 |
Y Patch | CCTTCCCTCCTCCCTC | + | 7705865 | 7705880 | -49 | -34 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATTTGGGCTTTTGGCCCATTT | + | 7705701 | 7705721 | -213 | -193 | |||
OsREG493 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG457 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG426 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG421 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG419 | GGGCTTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG422 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATTGGGCCAT | + | 7705739 | 7705748 | -175 | -166 | |||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG487 | TGGGCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATTGGGCCCATCCA | + | 7705783 | 7705797 | -131 | -117 | |||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG639 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG489 | GGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG608 | GCCCATCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG534 | CCCATCCA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |