Summary of Gene (J065207B12)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 013-058-H02 014-017-G07 014-028-F04 014-050-G04 014-095-F04 014-099-C08 016-046-F05 AK121139 J013104A14 J023077F13 J023145I11 J065033D14 J065079I15 J065104E21 J065128E06 J065174F07 J065195B12 J080304M24 J090040A13 J090054B18 J100037A06 J100042F24 J100043N23 J100044H14 J100056K24 J100063O22 J100071G05 J100078G15 TSS from cDNA TSS information J065207B12 5'->3' (-) Promoter sequence AK121892
J033105C15 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 20507340 | -114 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CACTGACA | - | 20507397 | 20507404 | -171 | -178 | |||
OsREG510 | CACTGACA | PPDB Motif |   | PLACE Motif | TGAC  | ||||
REG | ATCCGACGG | - | 20507406 | 20507414 | -180 | -188 | |||
OsREG483 | ATCCGACG | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG546 | TCCGACGG | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
REG | TAGGCCCAGA | - | 20507544 | 20507553 | -318 | -327 | |||
OsREG656 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | AGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG629 | GGCCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GAGGCCCAAAC | - | 20507564 | 20507574 | -338 | -348 | |||
OsREG587 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG593 | GCCCAAAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGCCGGGCCGGG | - | 20507581 | 20507592 | -355 | -366 | |||
OsREG614 | GGCCGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG616 | GCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG544 | CCGGGCCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG538 | GGGCCGGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCTGGGCCTA | + | 20507544 | 20507553 | AB062681, AK061722, AK106147, AK121892 | ||||
OsREG629 | TCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | CTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG656 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTTTGGGCCTC | + | 20507564 | 20507574 | AB062681, AK061722, AK106147, AK121892 | ||||
OsREG593 | GTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCGGCCCGGCC | + | 20507581 | 20507592 | AB062681, AK061722, AK106147, AK121892 | ||||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG544 | CGGCCCGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG616 | GGCCCGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG614 | GCCCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCACCAAC | + | 20507644 | 20507651 | AB062681, AK061722, AK106147, AK121892 | ||||
OsREG520 | CCACCAAC | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | CGGATCGGACGG | + | 20507659 | 20507670 | AB062681, AK061722, AK106147, AK121892 | ||||
OsREG541 | CGGATCGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG589 | GATCGGAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG484 | ATCGGACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG545 | TCGGACGG | PPDB Motif |   | PLACE Motif |   |