Summary of Gene (J075001C24)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 005-014-A06 009-085-G12 009-123-A08 009-134-A05 009-137-F06 016-016-B08 AF050674 AK061690 AK120797 J013040A15 J013104L20 J013127E12 J013158O05 J023012E09 J023126L23 J023143B03 J065005B16 J065101J15 J065105K16 J065155K16 J065171M17 J065182F07 J065187D10 J065194I24 J065207E24 J075090O10 J075095H17 J075109M24 J075123C18 J075148G22 J090009B09 J090075K17 J090081H23 J090097H21 J100063P14 TSS from cDNA TSS information J075001C24 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 42248710 | -49 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCCTCTCC | + | 42248661 | 42248669 | -98 | -90 |
Y Patch | TCTCTTTC | + | 42248714 | 42248721 | -45 | -38 |
Y Patch | TTCTCCTC | + | 42248724 | 42248731 | -35 | -28 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTATGGGCCGGCCC | + | 42248436 | 42248449 | -323 | -310 | |||
OsREG606 | GTATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG615 | GGGCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GAAGCCCACAA | + | 42248468 | 42248478 | -291 | -281 | |||
OsREG582 | GAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG427 | AAGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG461 | AGCCCACA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG597 | GCCCACAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGGGCCCACAA | + | 42248482 | 42248492 | -277 | -267 | |||
OsREG566 | CGGGCCCA | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG627 | GGCCCACA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG597 | GCCCACAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCACGTGCTGGGCCGGC | + | 42248525 | 42248542 | -234 | -217 | |||
OsREG508 | CCCACGTG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG620 | GCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG615 | GGGCCGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCTGGGCCAA | + | 42248568 | 42248577 | -191 | -182 | |||
OsREG620 | GCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG578 | CTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGTGGGCCGGA | + | 42248581 | 42248592 | -178 | -167 | |||
OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG564 | GTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG644 | GGGCCGGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGATGGGCCGTA | + | 42248611 | 42248622 | -148 | -137 | |||
OsREG607 | TGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG645 | GGGCCGTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AGCCCACGT | + | 42248651 | 42248659 | -108 | -100 | |||
OsREG463 | AGCCCACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG449 | GCCCACGT | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |