PlantPromoterDB promoter information of J075003J10
Summary of Gene (J075003J10)
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Overview
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Focused view (chromosome 7: 6288965-6287766)
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Genome position
from initiation codon J075004M03 J075017F22 J075025C09 J075038E21 J075039E12 J075050J10 J075059N03 J075067C21 J075068J12 J075079H09 J075086E20 J075112B17 J075127G02 J075139C01 J075142E11 J075150O15 J075164H12 J075177L18 J075184D19 TSS from cDNA TSS information J075003J10 5'->3' (-) Promoter sequence Os07g0214200 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J075003J10
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 6291814 | -49 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AGCTATATATAAAAC | - | 6291841 | 6291855 | -76 | -90 |
| Y Patch | TCCCTCTC | - | 6291806 | 6291813 | -41 | -48 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCGTGGA | - | 6291958 | 6291965 | -193 | -200 | |||
| OsREG636 | GGCGTGGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||