Summary of Gene (J075016I21)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK069719 J023020L05 J023026H16 J033025P22 J090015G21 TSS from cDNA TSS information J075016I21 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 15279768 | -149 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTCTC | + | 15279755 | 15279762 | -162 | -155 |
Y Patch | CTCTCCTCCCCCCTC | + | 15279802 | 15279816 | -115 | -101 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCCGGGCCCCACCCG | + | 15279469 | 15279484 | -448 | -433 | |||
OsREG614 | GGCCGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG616 | GCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG543 | CCGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG612 | GCCCCACC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG528 | CCCACCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGTGGGCCCACCT | + | 15279558 | 15279570 | -359 | -347 | |||
OsREG640 | GTGGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGTGGGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG476 | GCCCACCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCCACGCCCCCGCG | + | 15279581 | 15279594 | -336 | -323 | |||
OsREG636 | TCCACGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG537 | CCCCCGCG | PPDB Motif |   | PLACE Motif |   | ||||
REG | TCCGTCCG | + | 15279651 | 15279658 | -266 | -259 | |||
OsREG561 | TCCGTCCG | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCGTCGCGCCCACCT | + | 15279670 | 15279684 | -247 | -233 | |||
OsREG556 | GCGTCGCG | PPDB Motif |   | PLACE Motif | CGACG  | ||||
OsREG476 | GCCCACCT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |