PlantPromoterDB promoter information of J075016I21
Summary of Gene (J075016I21)
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Overview
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Focused view (chromosome 3: 15278917-15280116)
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Genome position
from initiation codon AK069719 J023020L05 J023026H16 J033025P22 J090015G21 TSS from cDNA TSS information J075016I21 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J075016I21
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 15279768 | -149 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTC | + | 15279755 | 15279762 | -162 | -155 |
| Y Patch | CTCTCCTCCCCCCTC | + | 15279802 | 15279816 | -115 | -101 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCGGGCCCCACCCG | + | 15279469 | 15279484 | -448 | -433 | |||
| OsREG614 | GGCCGGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG616 | GCCGGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG543 | CCGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG631 | GGCCCCAC | PPDB Motif | PLACE Motif | ||||||
| OsREG612 | GCCCCACC | PPDB Motif | PLACE Motif | ||||||
| OsREG528 | CCCACCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTGGGCCCACCT | + | 15279558 | 15279570 | -359 | -347 | |||
| OsREG640 | GTGGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG628 | GGTGGGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG476 | GCCCACCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCCACGCCCCCGCG | + | 15279581 | 15279594 | -336 | -323 | |||
| OsREG636 | TCCACGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG537 | CCCCCGCG | PPDB Motif | PLACE Motif | ||||||
| REG | TCCGTCCG | + | 15279651 | 15279658 | -266 | -259 | |||
| OsREG561 | TCCGTCCG | PPDB Motif | PLACE Motif | ||||||
| REG | GCGTCGCGCCCACCT | + | 15279670 | 15279684 | -247 | -233 | |||
| OsREG556 | GCGTCGCG | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG476 | GCCCACCT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||