Summary of Gene (J075041G24)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J075041G24 5'->3' (+) Promoter sequence Os03g0820000 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 35257826 | -272 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCCCCTCTC | + | 35257838 | 35257847 | -260 | -251 |
Y Patch | TCTCCTCCCCTCCCCC | + | 35257859 | 35257874 | -239 | -224 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGGCCAGACAGCCCACAC | + | 35257622 | 35257639 | -476 | -459 | |||
OsREG638 | GGGCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG435 | ACAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG461 | AGCCCACA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG598 | GCCCACAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACTGGGCCCT | + | 35257663 | 35257672 | -435 | -426 | |||
OsREG454 | ACTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG579 | CTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG475 | TGGGCCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TAATGGGCCTGAATGGGCCGGGCC | + | 35257678 | 35257701 | -420 | -397 | |||
OsREG610 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | AATGGGCC AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG474 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG513 | TGGGCCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG646 | GGGCCTGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG538 | GGGCCGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG614 | GGCCGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG616 | GCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGCACGCGCGCGAC | + | 35257717 | 35257730 | -381 | -368 | |||
OsREG555 | CGCACGCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG617 | GCGCGCGA | PPDB Motif |   | PLACE Motif |   | ||||
OsREG557 | CGCGCGAC | PPDB Motif | ACGCGC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |