PlantPromoterDB promoter information of J075048N11
Summary of Gene (J075048N11)
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Overview
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Focused view (chromosome 3: 1770093-1768894)
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Genome position
from initiation codon AB020502 AK062174 AK066378 AK100656 AK105699 AY339372 J013060B21 J013149P20 J013157D14 J023060E16 J023086B04 J033115L20 J033140O12 J033149J11 J043004A19 J053029N09 J053072I10 J065016G02 J065022E22 J065024K17 J065035E10 J065036D13 J065041E06 J065064H14 J065067I06 J065080C01 J065086K23 J065087L12 J065090I05 J065112C14 J065117E23 J065120A10 J065120L22 J065123F02 J065128G02 J065142B04 J065143K12 J065148B18 J065153C16 J065163J11 J065168L24 J065181J11 J065190F19 J065195L18 J065209E24 J065210G04 J065217H17 J065219I20 J075001M13 J075007B08 J075009I01 J075014C11 J075014L02 J075016E07 J075017J02 J075018F07 J075018N07 J075019B06 J075024F21 J075026B18 J075026M12 J075032B13 J075033O09 J075041A09 J075045L13 J075052A14 J075061B17 J075061I05 J075066I11 J075066P09 J075068F03 J075068P22 J075080I15 J075081I07 J075082K01 J075083A18 J075086O11 J075087E02 J075087M19 J075088G23 J075092K18 J075093K21 J075095H15 J075095K12 J075096L06 J075100H23 J075100K01 J075102K21 J075104F24 J075106C17 J075106E06 J075106M19 J075106O12 J075108I09 J075111M06 J075112E12 J075114C04 J075120A06 J075120D14 J075122P15 J075123A11 J075123L12 J075127G14 J075127H09 J075128M04 J075129J04 J075130J01 J075137N02 J075137O14 J075138E16 J075138H22 J075139P16 J075141G08 J075142C17 J075143B09 J075156I11 J075158M03 J075166I21 J075167C08 J075170C12 J075170F08 J075170G04 J075172N16 J075172P13 J075173G24 J075175D01 J075175E11 J075175K01 J075181O04 J075182A06 J075186A04 J075188P19 J075190B08 J075190M24 J075191O06 J075193D18 J075193H03 J075195N18 J080001N20 J080006K17 J080012I16 J080013K20 J080018N01 J080041G15 J080048L15 J080049A21 J080075G12 J080076O09 J080078P10 J080084D10 J090005N07 J090070D10 TSS from cDNA TSS information J075048N11 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J075048N11
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 1769151 | -208 |
| TSS clone peak | G | clone | - | 1769004 | -61 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCGCTATAAGTA | - | 1769028 | 1769039 | -85 | -96 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GACGCGAC | - | 1769082 | 1769089 | -139 | -146 | |||
| OsREG583 | GACGCGAC | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCCACGT | - | 1769122 | 1769130 | -179 | -187 | |||
| OsREG572 | GCCCCACG | PPDB Motif | PLACE Motif | ||||||
| OsREG450 | CCCCACGT | PPDB Motif | ACGT | PLACE Motif | |||||
| REG | CACGTCTC | - | 1769169 | 1769176 | -226 | -233 | |||
| OsREG506 | CACGTCTC | PPDB Motif | ACGT | PLACE Motif | |||||
| REG | CCCATCCACC | - | 1769198 | 1769207 | -255 | -264 | |||
| OsREG534 | CCCATCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG515 | CATCCACC | PPDB Motif | PLACE Motif | ||||||
| REG | TGCGGCCCATGT | - | 1769236 | 1769247 | -293 | -304 | |||
| OsREG643 | TGCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG618 | GCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG490 | CGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| OsREG437 | GCCCATGT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||