PlantPromoterDB promoter information of J075055A21
Summary of Gene (J075055A21)
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Overview
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Focused view (chromosome 6: 30220099-30221298)
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Genome position
from initiation codon 006-099-E12 009-074-D06 009-081-C02 013-065-B10 AK100361 AK105781 J013088K23 J013158L05 J023083M02 J075034E21 J075049F24 J100044A04 J100058I01 TSS from cDNA TSS information J075055A21 5'->3' (+) Promoter sequence J065019B03
J065047C24 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J075055A21
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 30219122 | -477 |
| TSS clone peak | G | clone | + | 30219310 | -289 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GGCTATATACAC | + | 30219270 | 30219281 | -329 | -318 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTATGGGC | + | 30219034 | 30219041 | -565 | -558 | |||
| OsREG606 | GTATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGACACGTCTC | + | 30219212 | 30219222 | -387 | -377 | |||
| OsREG452 | CGACACGT | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG506 | CACGTCTC | PPDB Motif | ACGT | PLACE Motif | |||||
| REG | CCACGCGTCGC | + | 30219230 | 30219240 | -369 | -359 | |||
| OsREG443 | CCACGCGT | PPDB Motif | PLACE Motif | ||||||
| OsREG559 | CGCGTCGC | PPDB Motif | PLACE Motif | CGACG | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||