Summary of Gene (J075084C08)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 006-033-E02 006-069-G07 006-083-A02 006-098-H04 009-054-C04 AK060030 AK061467 AK067858 AK106030 J013123A10 J065001I24 J065015N21 J065016H07 J065040A05 J065040F01 J065066G17 J065077I09 J065099M22 J065135B13 J065144H19 J065146I03 J065169E02 J065177D21 J065189L20 J065207H13 J065210D24 J065212I03 J075007E21 J075013H07 J075023K06 J075031D23 J075038K09 J075098K20 J090028E04 J090031E20 J090042F06 J090049L05 J090086G03 J090096J04 J100035O03 J100053H24 J100056L17 J100058K06 J100059G09 J100081C15 Os03g0855500 TSS from cDNA TSS information J075084C08 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 36925742 | -70 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCTCAGCT | + | 36925502 | 36925509 | -310 | -303 | |||
OsREG470 | GCTCAGCT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAATGGGCTTT | + | 36925572 | 36925582 | -240 | -230 | |||
OsREG610 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG432 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG429 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG421 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCTGGGCCGTA | + | 36925616 | 36925626 | -196 | -186 | |||
OsREG629 | TCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG645 | GGGCCGTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTGGCCCATGG | + | 36925630 | 36925640 | -182 | -172 | |||
OsREG653 | GTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG525 | GCCCATGG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
REG | GGGCGAGG | + | 36925668 | 36925675 | -144 | -137 | |||
OsREG549 | GGGCGAGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTTGGTGG | + | 36925680 | 36925687 | -132 | -125 | |||
OsREG520 | GTTGGTGG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | GGTGGATGGG | + | 36925689 | 36925698 | -123 | -114 | |||
OsREG515 | GGTGGATG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG534 | TGGATGGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |