Summary of Gene (J075088I01)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK061607 AK067252 AK104489 J013098L06 TSS from cDNA TSS information J075088I01 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 35812232 | -76 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCCTC | + | 35812223 | 35812230 | -85 | -78 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGTTGGGCCAT | + | 35811991 | 35812001 | -317 | -307 | |||
OsREG594 | TGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG626 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif |   | ||||
OsREG659 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG487 | TGGGCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGTGGGCT | + | 35812038 | 35812046 | -270 | -262 | |||
OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  | ||||
OsREG463 | CGTGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |