PlantPromoterDB promoter information of J075092M24
Summary of Gene (J075092M24)
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Overview
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Focused view (chromosome 1: 6265540-6266739)
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Genome position
from initiation codon J013093D23 J033114K19 J033126K14 J033133K20 J043001B09 J065008I04 J065027N12 J065038E02 J065090H24 J065100J21 J065127G17 J065136J15 J065161L24 J065161M24 J065169L17 J065180K21 J065183A16 J065189L09 J065213D11 J075004E06 J075017C19 J075024L12 J075031A13 J075046F13 J075062I15 J075080M14 J075103D18 J075124O11 J075159J01 J075192J05 J090015O10 J090046G20 J090078M01 TSS from cDNA TSS information J075092M24 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J075092M24
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 6266420 | -120 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GCCCTATATAAATG | + | 6266386 | 6266399 | -154 | -141 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||