Summary of Gene (J075106E06)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK100656 AK105699 J013157D14 J023086B04 J033115L20 J033140O12 J033149J11 J065112C14 J065195L18 J075093K21 J075138E16 J075175E11 J075182A06 J075188P19 J075191O06 J090070D10 TSS from cDNA TSS information J075106E06 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 1769151 | -208 |
TSS clone peak | G | clone | - | 1769004 | -61 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCGCTATAAGTA | - | 1769028 | 1769039 | -85 | -96 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GACGCGAC | - | 1769082 | 1769089 | -139 | -146 | |||
OsREG583 | GACGCGAC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCCCCACGT | - | 1769122 | 1769130 | -179 | -187 | |||
OsREG572 | GCCCCACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG450 | CCCCACGT | PPDB Motif | ACGT  | PLACE Motif |   | ||||
REG | CACGTCTC | - | 1769169 | 1769176 | -226 | -233 | |||
OsREG506 | CACGTCTC | PPDB Motif | ACGT  | PLACE Motif |   | ||||
REG | CCCATCCACC | - | 1769198 | 1769207 | -255 | -264 | |||
OsREG534 | CCCATCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG515 | CATCCACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | TGCGGCCCATGT | - | 1769236 | 1769247 | -293 | -304 | |||
OsREG643 | TGCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | GCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG437 | GCCCATGT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |