Summary of Gene (J075110C08)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon Os08g0433150 TSS from cDNA TSS information J075110C08 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 21098742 | -878 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCCCC | + | 21098756 | 21098763 | -864 | -857 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAGGCCCAGC | + | 21098522 | 21098531 | -1098 | -1089 | |||
OsREG430 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | AGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG620 | GGCCCAGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CATGGGCCTA | + | 21098550 | 21098559 | -1070 | -1061 | |||
OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG474 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG656 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CATGGGCCTA | + | 21098578 | 21098587 | -1042 | -1033 | |||
OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG474 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG656 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAGGCCCAAAC | + | 21098603 | 21098613 | -1017 | -1007 | |||
OsREG430 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG593 | GCCCAAAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TATGGGCCGAAA | + | 21098628 | 21098639 | -992 | -981 | |||
OsREG630 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG642 | GGGCCGAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG634 | GGCCGAAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TACGGCCCGGCCCAAA | + | 21098644 | 21098659 | -976 | -961 | |||
OsREG645 | TACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG446 | ACGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG544 | CGGCCCGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG616 | GGCCCGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG614 | GCCCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |