PlantPromoterDB promoter information of J075110D17
Summary of Gene (J075110D17)
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Overview
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Focused view (chromosome 8: 27647451-27646252)
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Genome position
from initiation codon 006-085-H05 006-101-B02 AK070842 AK104490 J013095F24 J013111D10 J023031C15 J023067J02 J023074O14 J033058F18 J033101F12 J053026B20 J065070G12 J065196H18 J075021N20 J075069K22 J075093E22 J075119D06 J075181H15 J090038O15 J090043K23 J090082E12 J100022M19 J100027E06 J100028G17 J100061I16 J100065G23 J100087C13 TSS from cDNA TSS information J075110D17 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J075110D17
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 27647317 | -116 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCCCC | - | 27647333 | 27647340 | -132 | -139 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGGGCCCACACG | - | 27647440 | 27647451 | -239 | -250 | |||
| OsREG475 | AGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG627 | GGCCCACA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG598 | GCCCACAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG526 | CCCACACG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||