Summary of Gene (J075110D17)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J075110D17 5'->3' (-) Promoter sequence AK069066
J023007A22 J023030P18 J023056L18 J023090P11 J023104P10 J023115M06 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 27647317 | -116 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCCCC | - | 27647333 | 27647340 | -132 | -139 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AGGGCCCACACG | - | 27647440 | 27647451 | -239 | -250 | |||
OsREG475 | AGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG627 | GGCCCACA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG598 | GCCCACAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG526 | CCCACACG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | + | 27648636 | AK069066, J023090P11, J023056L18, J023115M06, AK069066, J023007A22, J023030P18, J023104P10 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCTTCCT | + | 27648676 | 27648683 | AK069066, J023007A22, J023030P18, J023056L18, J023090P11, J023104P10, J023115M06 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CCTGTCAGT | + | 27648446 | 27648454 | AK069066, J023007A22, J023030P18, J023056L18, J023090P11, J023104P10, J023115M06 | ||||
OsREG551 | CCTGTCAG | PPDB Motif |   | PLACE Motif | TGAC  | ||||
OsREG453 | CTGTCAGT | PPDB Motif |   | PLACE Motif | TGAC  | ||||
REG | CGCGTGCG | + | 27648505 | 27648512 | AK069066, J023007A22, J023030P18, J023056L18, J023090P11, J023104P10, J023115M06 | ||||
OsREG555 | CGCGTGCG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGGACGGA | + | 27648547 | 27648554 | AK069066, J023007A22, J023030P18, J023056L18, J023090P11, J023104P10, J023115M06 | ||||
OsREG561 | CGGACGGA | PPDB Motif |   | PLACE Motif |   |