PlantPromoterDB promoter information of J075127A16
Summary of Gene (J075127A16)
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Overview
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Focused view (chromosome 3: 9090250-9089051)
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Genome position
from initiation codon J075092I17 TSS from cDNA TSS information J075127A16 5'->3' (-) Promoter sequence Os03g0270400 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J075127A16
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 9085954 | -104 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCGGCCCACGT | - | 9086055 | 9086065 | -205 | -215 | |||
| OsREG658 | TCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG564 | CGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG571 | GGCCCACG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG449 | GCCCACGT | PPDB Motif | GCCCA, ACGT | PLACE Motif | ACGTSSSC | ||||
| REG | GAAGCCCATT | - | 9086077 | 9086086 | -227 | -236 | |||
| OsREG582 | GAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG429 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG432 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||