PlantPromoterDB promoter information of J075129C12
Summary of Gene (J075129C12)
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Overview
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Focused view (chromosome 7: 6291165-6289966)
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Genome position
from initiation codon D42140 D43657 D43659 J065067N22 J065120B05 J075001F02 J075001F03 J075001K10 J075001N06 J075003C19 J075003C24 J075003J10 J075004B12 J075004K23 J075005G17 J075006G20 J075007E23 J075007F23 J075010P10 J075013F16 J075017H12 J075019O13 J075021G15 J075021H18 J075021N23 J075025B03 J075028E10 J075028L03 J075029D23 J075029J09 J075030K21 J075031K19 J075032F16 J075033G23 J075033O22 J075035J03 J075038E21 J075039F14 J075039M23 J075040G14 J075042B13 J075044N03 J075046G15 J075050D15 J075050F23 J075050J08 J075052G19 J075053G08 J075053M18 J075055F01 J075058D20 J075059N03 J075060K20 J075067C21 J075067P06 J075070K22 J075071E21 J075073D13 J075075B12 J075078D07 J075079C13 J075080B08 J075080G23 J075080L15 J075083G24 J075083L01 J075084O06 J075085K07 J075088F06 J075089D03 J075089F23 J075089G03 J075090A17 J075091N19 J075091O21 J075093H12 J075096H23 J075096K21 J075096P07 J075098F24 J075099B01 J075104L24 J075105E22 J075106H15 J075108G12 J075108K15 J075112B17 J075115G04 J075118J01 J075119D14 J075120K02 J075121J04 J075122A19 J075122N11 J075123M09 J075127M18 J075130M01 J075134O08 J075135C11 J075135D24 J075139C01 J075140K20 J075142B08 J075147H09 J075148P05 J075149E14 J075149J18 J075150E12 J075151F14 J075152H11 J075154H06 J075161A14 J075162G13 J075164H12 J075166E07 J075166F06 J075169P20 J075170M14 J075172J02 J075172L24 J075176K04 J075176L10 J075177I19 J075177L24 J075177O18 J075179L10 J075185C01 J075185L14 J075186D02 J075188J05 J075188P08 J075190G17 J075191C22 J075192J02 J075194G13 J075194J04 J075194M12 J075198L01 J075199E19 J075199G17 J075199L04 X62091 TSS from cDNA TSS information J075129C12 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J075129C12
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 6291814 | -49 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AGCTATATATAAAAC | - | 6291841 | 6291855 | -76 | -90 |
| Y Patch | TCCCTCTC | - | 6291806 | 6291813 | -41 | -48 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCGTGGA | - | 6291958 | 6291965 | -193 | -200 | |||
| OsREG636 | GGCGTGGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||