PlantPromoterDB promoter information of J075129C12
Summary of Gene (J075129C12)
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Overview
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Focused view (chromosome 7: 6293015-6291816)
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Genome position
from initiation codon J075003C24 J075007F23 J075010P10 J075025B03 J075033G23 J075039F14 J075050F23 J075070K22 J075075B12 J075078D07 J075083G24 J075088F06 J075089D03 J075096K21 J075096P07 J075099B01 J075121J04 J075127M18 J075130M01 J075150E12 J075161A14 J075170M14 J075172J02 J075188J05 J075190G17 J075192J02 TSS from cDNA TSS information J075129C12 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J075129C12
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 6291814 | -49 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AGCTATATATAAAAC | - | 6291841 | 6291855 | -76 | -90 |
| Y Patch | TCCCTCTC | - | 6291806 | 6291813 | -41 | -48 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCGTGGA | - | 6291958 | 6291965 | -193 | -200 | |||
| OsREG636 | GGCGTGGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||