PlantPromoterDB promoter information of J075141B13
Summary of Gene (J075141B13)
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Overview
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Focused view (chromosome 6: 31783738-31782539)
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Genome position
from initiation codon AK065121 AK119436 AY302112 D10752 D11082 J013001O19 J013031L12 J013042M09 J013058E01 J013063J17 J013066I24 J013069F17 J013096O13 J013106E01 J013118D19 J013132K03 J013162M11 J023028B19 J023031A13 J023047H18 J023059N10 J023089H22 J023102B19 J023104N22 J023131E11 J023140K16 J033025G20 J033025J03 J033045B05 J033067M08 J033108P04 J033113D04 J043003D11 J043009O20 J043016P06 J043017C21 J043017J20 J043021P15 J043026I22 J043032L15 J043034G14 J043039L16 J043040F17 J075003D02 J075003O22 J075005I24 J075006N09 J075011A22 J075012K24 J075017D01 J075017I23 J075023D17 J075024B03 J075025H05 J075031D19 J075034B02 J075035C02 J075037J12 J075038M11 J075039J17 J075042P10 J075046J20 J075047F21 J075053E05 J075054D11 J075054K06 J075059E15 J075061O04 J075062I20 J075066I12 J075066L06 J075071H12 J075071N19 J075074K01 J075077H22 J075083H18 J075085F04 J075085K09 J075086C06 J075086E06 J075087A15 J075090N02 J075090N22 J075091C04 J075091G16 J075097E04 J075099E04 J075102P22 J075109B08 J075109J02 J075115I12 J075117E17 J075123C07 J075124N05 J075125E12 J075126B11 J075129E14 J075130N15 J075131I07 J075141B20 J075144D23 J075144N01 J075147M24 J075148L16 J075151A22 J075151D03 J075151D04 J075153E23 J075156D02 J075156P05 J075162E23 J075165J22 J075166A06 J075168H13 J075170D04 J075171C19 J075173B12 J075173M23 J075174C03 J075185O11 J075186G21 J075187D06 J075195G21 J090003D18 J090004I11 J090005I12 J090007D15 J090007G20 J090014G13 J090014L08 J090016J03 J090018J04 J090023P22 J090025C19 J090028F11 J090028G01 J090028H02 J090034D19 J090037B17 J090037I11 J090040F21 J090040N24 J090044M12 J090045B13 J090045M22 J090048C10 J090051J02 J090058O15 J090062F11 J090063F04 J090063O17 J090067D23 J090069G15 J090072I06 J090073H18 J090073L01 J090075O21 J090084K24 J090087P11 J090092B17 J090094D05 J100042H08 TSS from cDNA TSS information J075141B13 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J075141B13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 31782805 | -117 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCGTCCACGTGGC | - | 31782876 | 31782890 | -188 | -202 | |||
| OsREG624 | GGCCGTCC | PPDB Motif | PLACE Motif | ||||||
| OsREG507 | CACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | TTGGCCCAAA | - | 31782909 | 31782918 | -221 | -230 | |||
| OsREG660 | TTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG659 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GACACGTGAAGGCCCATGG | - | 31782923 | 31782941 | -235 | -253 | |||
| OsREG509 | GACACGTG | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG430 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG474 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| OsREG525 | GCCCATGG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| REG | ACTGACAG | - | 31783088 | 31783095 | -400 | -407 | |||
| OsREG453 | ACTGACAG | PPDB Motif | PLACE Motif | TGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||