PlantPromoterDB promoter information of J075141B13
Summary of Gene (J075141B13)
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Overview
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Focused view (chromosome 6: 31784738-31783539)
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Genome position
from initiation codon AK111844 AK112103 J023135N14 TSS from cDNA TSS information J075141B13 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J075141B13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 31782805 | -117 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCGTCCACGTGGC | - | 31782876 | 31782890 | -188 | -202 | |||
| OsREG624 | GGCCGTCC | PPDB Motif | PLACE Motif | ||||||
| OsREG507 | CACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | TTGGCCCAAA | - | 31782909 | 31782918 | -221 | -230 | |||
| OsREG660 | TTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG659 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GACACGTGAAGGCCCATGG | - | 31782923 | 31782941 | -235 | -253 | |||
| OsREG509 | GACACGTG | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG430 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG474 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| OsREG525 | GCCCATGG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| REG | ACTGACAG | - | 31783088 | 31783095 | -400 | -407 | |||
| OsREG453 | ACTGACAG | PPDB Motif | PLACE Motif | TGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||