Summary of Gene (J075141B13)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK111844 AK112103 J023135N14 TSS from cDNA TSS information J075141B13 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 31782805 | -117 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCCGTCCACGTGGC | - | 31782876 | 31782890 | -188 | -202 | |||
OsREG624 | GGCCGTCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG507 | CACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | TTGGCCCAAA | - | 31782909 | 31782918 | -221 | -230 | |||
OsREG660 | TTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GACACGTGAAGGCCCATGG | - | 31782923 | 31782941 | -235 | -253 | |||
OsREG509 | GACACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG430 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG474 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG525 | GCCCATGG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
REG | ACTGACAG | - | 31783088 | 31783095 | -400 | -407 | |||
OsREG453 | ACTGACAG | PPDB Motif |   | PLACE Motif | TGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |