Summary of Gene (J075143N04)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK069163 AK109489 J065123D15 J065124L12 J065180F02 J080014B10 J080026L16 J080044H09 J080071M17 TSS from cDNA TSS information J075143N04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 25947698 | -111 |
TSS clone peak | C | clone | + | 25947759 | -50 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAATGGGC | + | 25947627 | 25947634 | -182 | -175 | |||
OsREG610 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GACGTGGCTTGGGCT | + | 25947647 | 25947661 | -162 | -148 | |||
OsREG585 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG459 | CTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGTGTGTG | + | 25947672 | 25947679 | -137 | -130 | |||
OsREG499 | GGTGTGTG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |