PlantPromoterDB promoter information of J075143N04
Summary of Gene (J075143N04)
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Overview
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Focused view (chromosome 7: 25946809-25948008)
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Genome position
from initiation codon AK069163 AK109489 J065123D15 J065124L12 J065180F02 J080014B10 J080026L16 J080044H09 J080071M17 TSS from cDNA TSS information J075143N04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J075143N04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 25947698 | -111 |
| TSS clone peak | C | clone | + | 25947759 | -50 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAATGGGC | + | 25947627 | 25947634 | -182 | -175 | |||
| OsREG610 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GACGTGGCTTGGGCT | + | 25947647 | 25947661 | -162 | -148 | |||
| OsREG585 | GACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG459 | CTTGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTGTGTG | + | 25947672 | 25947679 | -137 | -130 | |||
| OsREG499 | GGTGTGTG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||