PlantPromoterDB promoter information of J075149A18
Summary of Gene (J075149A18)
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Overview
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Focused view (chromosome 3: 33779993-33781192)
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Genome position
from initiation codon AK071881 AK100700 AK103914 J075003P20 J075096M17 J075115D10 J075118I02 J075124K07 J075127J06 J075152H23 J075179C01 J075187K20 J090067P16 J090079I02 TSS from cDNA TSS information J075149A18 5'->3' (+) Promoter sequence 009-142-A02
013-037-A12 AB079798 AK067703 AK120251 J013045G10 J023102B18 J065020J23 J065115F11 J065127I21 J065151E11 J075076B05 J075116C15 J075136A07 J100029G21 J100030K01 J100041J02 J100049C22 J100057G17 J100086L12 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J075149A18
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 33778614 | -279 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCATCCA | + | 33778419 | 33778426 | -474 | -467 | |||
| OsREG534 | CCCATCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||