PlantPromoterDB promoter information of J075149N13
Summary of Gene (J075149N13)
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Overview
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Focused view (chromosome 1: 6703246-6702047)
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Genome position
from initiation codon 009-033-G12 009-033-H11 009-035-E10 009-055-G02 009-099-D04 009-102-D04 009-106-H11 009-138-E08 009-144-F01 009-151-B02 009-161-C09 009-165-F03 009-174-A02 013-068-G04 016-031-B06 AK072778 AK121276 J013153J15 J023107H23 J023139P14 J065042L22 J065065H04 J065066E12 J065141H05 J075086C16 J075094J10 J075130A15 J075161L21 J075179H08 J075191H11 TSS from cDNA TSS information J075149N13 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J075149N13
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 6703726 | -80 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCTCCTCC | - | 6703678 | 6703688 | -32 | -42 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACACACC | - | 6703979 | 6703986 | -333 | -340 | |||
| OsREG499 | CACACACC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | - | 6702351 | AK072778, AK072778 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||