PlantPromoterDB promoter information of J075188P09
Summary of Gene (J075188P09)
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Overview
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Focused view (chromosome 7: 5769709-5770908)
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Genome position
from initiation codon J075014P20 J075022I09 J075024D05 J075025H18 J075027I07 J075038J15 J075040B12 J075041G09 J075043N10 J075054M13 J075058N16 J075066M07 J075079N06 J075081H09 J075082G20 J075082L18 J075089I12 J075091O20 J075097I07 J075132C02 J075143B01 J075143D23 J075165E11 J075173D11 J075175A22 J075184L08 J075184L18 J075195H11 J075196L17 TSS from cDNA TSS information J075188P09 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J075188P09
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 5774003 | -56 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTATAAATA | + | 5773968 | 5773977 | -91 | -82 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGATGGGC | + | 5773824 | 5773831 | -235 | -228 | |||
| OsREG607 | TGATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||