PlantPromoterDB promoter information of J075198L04
Summary of Gene (J075198L04)
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Overview
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Focused view (chromosome 4: 34384137-34385336)
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Genome position
from initiation codon 013-084-D06 AK061504 AK101970 AK107564 AK121951 AY224506 J013020L20 J033034K12 J033076K20 J033107K04 J065014E01 J065034N22 J065037F07 J065044C03 J065103I10 J065106P15 J065142G06 J075061O20 J075091P11 J075093M23 J075095A18 J075117C22 J075139N15 J075143D19 J075166B22 J090032K13 J090045E22 TSS from cDNA TSS information J075198L04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J075198L04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 34381515 | -122 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCCTCTCTCTC | + | 34381486 | 34381499 | -151 | -138 |
| Y Patch | CCCCTTCC | + | 34381535 | 34381542 | -102 | -95 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGCCCAAAGCCCAAG | + | 34381361 | 34381377 | -276 | -260 | |||
| OsREG653 | GTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG659 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG421 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG426 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG459 | AGCCCAAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GAGGCCCAAAGCCCAACT | + | 34381439 | 34381456 | -198 | -181 | |||
| OsREG587 | GAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG471 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG421 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG426 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG458 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | |||||
| OsREG479 | GCCCAACT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||