Summary of Gene (J080006K23)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 009-023-C09 009-031-B11 009-034-C02 009-050-B08 009-065-D12 009-090-G08 009-111-H07 009-136-F12 009-138-E06 009-138-G12 009-141-D08 009-143-D01 009-179-D09 009-179-E03 009-196-A09 009-199-F04 013-021-E05 013-076-C04 013-096-F06 014-071-A05 014-077-F09 AK099779 AK121142 J013095A16 J013111A17 J013132G04 J023077M04 J065001B11 J065001E11 J065057G10 J065057L08 J065080E07 J065087K10 J065091M15 J065167A15 J075018F02 J075063F20 J075064F18 J075066N19 J075073I02 J075080P17 J075081F11 J075085E03 J075101G18 J075149N08 J075158I21 J075161M20 J075190F12 J075194K16 J080001E08 J080001F21 J080001H19 J080001O15 J080005I22 J080014D20 J080014I05 J080014K21 J080017I24 J080017K11 J080018F11 J080022L18 J080024N23 J080027J23 J080029B14 J080032F14 J080032K19 J080032O21 J080033P17 J080034I06 J080039F24 J080040O13 J080042B02 J080043E12 J080043J15 J080043N09 J080052J08 J080053K01 J080053K19 J080055J09 J080058D07 J080062F11 J080063J24 J080066H04 J080066I09 J080067B02 J080067N09 J080068D22 J080068K13 J080069N19 J080070D07 J080070E05 J080071G04 J080077G05 J080077O06 J080085F05 J080086E07 J080089G16 J080092K15 J080094A08 J080097A09 J080097J07 J090027N01 J090081J05 TSS from cDNA TSS information J080006K23 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | + | 520220 | -60 |
TSS clone peak | G | clone | + | 520247 | -33 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTGGCGTG | + | 519967 | 519974 | -313 | -306 | |||
OsREG502 | GTGGCGTG | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGGTGGGCTTGG | + | 520021 | 520032 | -259 | -248 | |||
OsREG476 | AGGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG462 | GGTGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG427 | GTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG496 | TGGGCTTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG519 | GGGCTTGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGCGGCCCATAT | + | 520040 | 520051 | -240 | -229 | |||
OsREG643 | TGCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | GCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG480 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATTGGGCCAA | + | 520059 | 520069 | -221 | -211 | |||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGTCAGTG | + | 520094 | 520101 | -186 | -179 | |||
OsREG510 | TGTCAGTG | PPDB Motif |   | PLACE Motif | TGAC  | ||||
REG | GTGGGACCCG | + | 520119 | 520128 | -161 | -152 | |||
OsREG650 | GTGGGACC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG648 | TGGGACCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG569 | GGGACCCG | PPDB Motif | GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |