Summary of Gene (J080014K21)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J080014K21 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | + | 520220 | -60 |
TSS clone peak | G | clone | + | 520247 | -33 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTGGCGTG | + | 519967 | 519974 | -313 | -306 | |||
OsREG502 | GTGGCGTG | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGGTGGGCTTGG | + | 520021 | 520032 | -259 | -248 | |||
OsREG476 | AGGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG462 | GGTGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG427 | GTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG496 | TGGGCTTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG519 | GGGCTTGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGCGGCCCATAT | + | 520040 | 520051 | -240 | -229 | |||
OsREG643 | TGCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | GCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG480 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATTGGGCCAA | + | 520059 | 520069 | -221 | -211 | |||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGTCAGTG | + | 520094 | 520101 | -186 | -179 | |||
OsREG510 | TGTCAGTG | PPDB Motif |   | PLACE Motif | TGAC  | ||||
REG | GTGGGACCCG | + | 520119 | 520128 | -161 | -152 | |||
OsREG650 | GTGGGACC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG648 | TGGGACCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG569 | GGGACCCG | PPDB Motif | GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |