Summary of Gene (J080017K11)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 009-034-C02 009-138-G12 009-196-A09 009-199-F04 013-021-E05 013-076-C04 AK121142 J023077M04 J065001B11 J065001E11 J075064F18 J075066N19 J075073I02 J075080P17 J075081F11 J075085E03 J075101G18 J075149N08 J075158I21 J075190F12 J075194K16 J080001E08 J080001F21 J080006K23 J080014D20 J080014I05 J080017I24 J080018F11 J080024N23 J080032F14 J080032K19 J080042B02 J080043J15 J080043N09 J080052J08 J080055J09 J080063J24 J080067N09 J080070E05 J080071G04 J080089G16 J080097J07 TSS from cDNA TSS information J080017K11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | + | 520220 | -60 |
TSS clone peak | G | clone | + | 520247 | -33 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTGGCGTG | + | 519967 | 519974 | -313 | -306 | |||
OsREG502 | GTGGCGTG | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGGTGGGCTTGG | + | 520021 | 520032 | -259 | -248 | |||
OsREG476 | AGGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG462 | GGTGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG427 | GTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG496 | TGGGCTTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG519 | GGGCTTGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGCGGCCCATAT | + | 520040 | 520051 | -240 | -229 | |||
OsREG643 | TGCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | GCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG480 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATTGGGCCAA | + | 520059 | 520069 | -221 | -211 | |||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGTCAGTG | + | 520094 | 520101 | -186 | -179 | |||
OsREG510 | TGTCAGTG | PPDB Motif |   | PLACE Motif | TGAC  | ||||
REG | GTGGGACCCG | + | 520119 | 520128 | -161 | -152 | |||
OsREG650 | GTGGGACC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG648 | TGGGACCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG569 | GGGACCCG | PPDB Motif | GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |