PlantPromoterDB promoter information of J080018O22
Summary of Gene (J080018O22)
|
Overview
|
Focused view (chromosome 12: 10083192-10081993)
|
Genome position
from initiation codon TSS from cDNA TSS information J080018O22 5'->3' (-) Promoter sequence Os12g0275000 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
|
|
Promoter Summary of J080018O22
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 10080501 | -59 |
| TSS clone peak | A | clone | - | 10080498 | -56 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGATCCG | - | 10080546 | 10080553 | -104 | -111 | |||
| OsREG541 | CCGATCCG | PPDB Motif | PLACE Motif | ||||||
| REG | CCACGGCC | - | 10080685 | 10080692 | -243 | -250 | |||
| OsREG521 | CCACGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCATCA | - | 10080766 | 10080773 | -324 | -331 | |||
| OsREG607 | GCCCATCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACCCGCGC | - | 10080775 | 10080782 | -333 | -340 | |||
| OsREG439 | ACCCGCGC | PPDB Motif | PLACE Motif | ||||||
| REG | CCCATCCA | - | 10080788 | 10080795 | -346 | -353 | |||
| OsREG534 | CCCATCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||